PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG241000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 260aa    MW: 28451.8 Da    PI: 4.8431
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG241000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.1e-10152196655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             ErrRR+++   f++L +++P a     +K +K++ L  +++Y+++L+
  Pavir.9KG241000.1.p 152 VLGERRRREKMHLQFATLASIIPDA-----TKRDKVSLLGSTIDYVQHLR 196
                          556**********************.....9*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.41E-10139200No hitNo description
PROSITE profilePS5088814.291146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-13149208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-13150206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-8151195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-10152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MNSSSANHQW LEELENEDLG ELDFIDPLSM QQLAESLADE LWDQPTQEQQ VQLDLRRQPM  60
CPTGFSFLGD VSKYYAGAEG FPTTMTAISA GGGDSMFSFT DGKSKQLSFS SPEPKQEGDA  120
TATAGRFGAP PPPTTMETKG RRRASSRVHE HVLGERRRRE KMHLQFATLA SIIPDATKRD  180
KVSLLGSTID YVQHLRGRLK ALQDEQLQST GSTAESPPLD ARCCIGSEDD GEASQKIEAD  240
VRGTTVLLRV VCREKITGC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140158RRRASSRVHEHVLGERRRR
2146158RVHEHVLGERRRR
3154159ERRRRE
4155160RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659077.11e-98PREDICTED: transcription factor bHLH18-like
TrEMBLK4AKH01e-121K4AKH0_SETIT; Uncharacterized protein
STRINGSi039393m1e-120(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138961725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-15bHLH family protein